Models for the atom
Once atoms were found, it became evident that atoms were composed of protons, neutrons and electrons. The first model, due to J.J. Thomson, was the plum pudding model. This suggested that the atom was a positively charged cloud with electrons floating in it. This model is incorrect.

All models in science have to be consistent with experiment. While at McGill University in Montreal, Ernest Rutherford did a series of scattering experiments that proved the Plum pudding model was incorrect.
Introduction to physical chemistry
Properties of Matter:
At the energy we mostly deal with in chemistry matter is composed of atoms, molecules and ions. From a chemical point of view, these particles interact though the electromagnetic force.

In contrast physics is interested in energies all the way up to the Big Bang Theory whence matter is composed of elementary particles. A major part of understanding matter in physics is the creation and destruction of particles. In chemistry we do not concern ourselves much with that, although photons are regularly created and destroyed in chemical processes and studied as spectroscopy.